PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G118100.1
Common NameB456_007G118100, LOC105802905
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 559aa    MW: 61942.2 Da    PI: 7.724
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G118100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.3e-15379426355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h+  ErrRRd+iN+++  L+el+P++      K++Ka++L +A++Y+k Lq
  Gorai.007G118100.1 379 ELHKLCERRRRDKINEKMRALQELIPNC-----NKVDKASMLDEAIDYLKTLQ 426
                         5699***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.0E-21373435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-20373446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.51E-16374430No hitNo description
PROSITE profilePS5088817.841376425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-12380426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-16382431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MAEKPTPESI PRRITTPFPN LSSMCDPNFV EHAWENDQNL IRGLSSKIPK KNFPGSGYFS  60
QSSKARIQHE GETPTVNTSK HGVADSTSTY GDPLSSITKT NRLNHHHHEN YITSLQTGYR  120
ELLFEDGFNV ALEADQKCYD QQLLDSNIVP TNKYKNFKQS NVLDVPELVH EIPQQTMNND  180
SQLPQPQPET CIPFMRSKDK YSRIDEKSER ANFSIFLNSP ALPKSNQIPC CGVTIPRSTP  240
GLAVEEDDDL EANARSIPFA KEAKSMKPIL PDYEPEKEWV VPDEQSEAVG FNDNMRLPSS  300
RVGGTSSGLA PNTIMKGKVV EQKVASSSVC SRGASNCPVN TFERRYEDTD LSDNDELEEA  360
HETTKATPSK GSKRKRKSEL HKLCERRRRD KINEKMRALQ ELIPNCNKVD KASMLDEAID  420
YLKTLQLQVQ MMSMGTAGVY MPPMMLPASS MQHINARQLG GYSPMAMGMG MQMGLGCTTA  480
TQFPSVTSLM PGIMQARFNM LGLPRQVLLM SRSPFASLAA TFPPQSVRTT SVSQALAAVP  540
LSTSKDSNPA LQLKTRNA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374388KRKSELHKLCERRRR
2384389ERRRRD
3385390RRRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5911591e-104JX591159.1 Gossypium hirsutum clone NBRI_GE26219 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490264.10.0PREDICTED: uncharacterized protein LOC105802905
TrEMBLA0A0D2TDK00.0A0A0D2TDK0_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16436813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-36phytochrome interacting factor 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]